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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
28
total RNA-seq
16
ATAC-seq
4
DNase-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
56
DNA binding
29
Transcription
21
DNA accessibility
1
3D chromatin structure
Target of assay
53
histone
53
histone modification
29
broad histone mark
24
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
103
bam
95
bigWig
73
fastq
67
bed narrowPeak
28
tsv
27
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
csv
1
hic
1
tar
Organism
107
Homo sapiens
Biosample type
242
tissue
107
primary cell
30
cell line
8
in vitro differentiated cells
Organ
94
epithelium
72
pancreas
21
blood vessel
21
vasculature
21
vein
11
kidney
1
liver
Project
107
AMP
Genome assembly (visualization)
98
hg19
94
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
single cell RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
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