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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
31
ChIP-seq
24
DNase-seq
16
total RNA-seq
3
ATAC-seq
Assay category
56
Transcription
31
DNA binding
27
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
55
bam
50
bigWig
47
bed narrowPeak
47
bigBed narrowPeak
41
fastq
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
19
zippedFastqFolder
Organism
114
Homo sapiens
Biosample type
163
tissue
114
primary cell
Organ
39
epithelium
19
pancreas
17
connective tissue
13
kidney
11
musculature of body
8
heart
5
brain
4
eye
4
vasculature
2
blood vessel
2
liver
Project
59
HPAP
55
AMP
Genome assembly (visualization)
50
GRCh38
40
hg19
Lab
59
Klaus Kaestner, Upenn
55
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
BIOSAMPLE
ASSAY
114 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
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