Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
260
DNA accessibility
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
29
July, 2019
18
August, 2017
12
June, 2019
11
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
404
bam
381
bigWig
336
fastq
268
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
816
Homo sapiens
Biosample type
1923
tissue
816
primary cell
513
cell line
281
in vitro differentiated cells
8
stem cell
Organ
322
epithelium
288
pancreas
25
connective tissue
16
kidney
12
vasculature
10
blood vessel
10
brain
9
liver
8
blood
8
bodily fluid
8
heart
5
musculature of body
5
vein
3
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
371
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
370
hg19
305
GRCh38
Lab
366
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
organ_slims!
artery
target.investigated_as!
histone
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
816 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
+ See 86 more…
See all biosamples
Download