Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
26
ChIP-seq
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
162
Transcription
91
DNA accessibility
53
DNA methylation
26
DNA binding
7
3D chromatin structure
Target of assay
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
40
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
19
September, 2020
18
June, 2019
15
August, 2017
12
July, 2019
12
October, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
September, 2017
4
November, 2017
3
August, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
June, 2018
1
March, 2020
Available data
201
fastq
175
bam
167
bigWig
115
tsv
80
zippedFastqFolder
45
bed narrowPeak
44
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tagAlign
1
tar
Organism
339
Homo sapiens
Biosample type
339
primary cell
67
cell line
15
tissue
9
in vitro differentiated cells
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
187
AMP
152
HPAP
Genome assembly (visualization)
163
GRCh38
163
hg19
Lab
187
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
4
audit script error
organ_slims!
artery
target.investigated_as!
histone
BIOSAMPLE
ASSAY
339 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
pancreatic beta cell
21
23
12
16
6
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
+ See 18 more…
See all biosamples
Download