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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
116
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
44
total RNA-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
1
DNAme array
Assay category
187
DNA binding
185
DNA accessibility
131
Transcription
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
11
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
102
May, 2020
54
May, 2022
41
February, 2021
40
September, 2020
39
February, 2023
35
June, 2019
30
August, 2017
12
September, 2018
8
January, 2021
5
July, 2019
3
November, 2017
2
November, 2020
1
March, 2023
1
November, 2018
1
October, 2019
Available data
382
bigWig
367
bam
189
bed narrowPeak
171
fastq
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
528
Homo sapiens
Biosample type
1649
tissue
528
primary cell
499
cell line
241
in vitro differentiated cells
6
stem cell
Organ
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
247
AMP
172
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
259
hg19
169
GRCh38
Lab
212
AMP-T2D consortium
172
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
inconsistent ontology term
27
audit script error
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
epithelium
files.file_type!
tsv
BIOSAMPLE
ASSAY
528 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
48
monocyte
85
15
1
1
1
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
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