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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
107
ChIP-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
197
DNA accessibility
107
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
26
June, 2019
18
July, 2019
16
August, 2017
15
July, 2018
10
April, 2018
8
January, 2021
8
September, 2018
6
November, 2020
2
June, 2018
2
November, 2017
1
March, 2023
1
November, 2018
1
October, 2019
Available data
304
bigWig
299
bam
154
tsv
152
fastq
119
bed narrowPeak
73
zippedFastqFolder
51
tagAlign
32
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
602
Homo sapiens
Biosample type
2413
tissue
602
primary cell
570
cell line
323
in vitro differentiated cells
9
stem cell
Organ
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
265
AMP
172
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
323
hg19
243
GRCh38
Lab
240
AMP-T2D consortium
189
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
37
inconsistent ontology term
27
audit script error
Audit category:
11
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
602 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
Langerhans cell
85
48
monocyte
54
15
44
1
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
2
23
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
1
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