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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
247
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
384
Transcription
276
DNA binding
227
DNA accessibility
16
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
40
September, 2020
34
October, 2019
30
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
610
bigWig
605
bam
409
fastq
292
bed narrowPeak
270
tsv
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
930
Homo sapiens
Biosample type
2681
tissue
930
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
326
epithelium
266
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
554
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
624
hg19
533
GRCh38
Lab
519
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
930 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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