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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
8
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
282
DNA accessibility
267
DNA binding
56
DNA methylation
7
3D chromatin structure
Target of assay
233
histone
233
histone modification
122
broad histone mark
111
narrow histone mark
28
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
46
June, 2019
43
April, 2018
34
October, 2019
23
July, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
590
bigWig
588
bam
400
fastq
281
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
28
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
1062
Homo sapiens
Biosample type
2416
tissue
1062
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
533
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
603
hg19
519
GRCh38
Lab
498
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
eye
brain
BIOSAMPLE
ASSAY
1062 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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