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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
58
total RNA-seq
30
DNase-seq
9
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
185
DNA binding
182
DNA accessibility
161
Transcription
10
DNA methylation
6
3D chromatin structure
Target of assay
145
histone
145
histone modification
74
broad histone mark
71
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
416
bam
412
bigWig
240
fastq
202
bed narrowPeak
166
tsv
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
545
Homo sapiens
Biosample type
2558
tissue
651
cell line
545
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
545
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
433
hg19
334
GRCh38
Lab
510
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
545 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
small RNA-seq
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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