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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
287
DNA accessibility
259
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
34
October, 2019
28
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
592
bigWig
586
bam
404
fastq
276
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
90
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1064
Homo sapiens
Biosample type
2566
tissue
1064
primary cell
345
in vitro differentiated cells
301
cell line
10
stem cell
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
535
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
606
hg19
516
GRCh38
Lab
500
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1064 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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