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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
17
DNase-seq
9
RRBS
5
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
252
Transcription
229
DNA binding
101
DNA accessibility
9
DNA methylation
5
3D chromatin structure
Target of assay
216
histone
216
histone modification
111
broad histone mark
105
narrow histone mark
8
RNA binding protein
8
control
8
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
37
June, 2019
26
July, 2019
10
October, 2019
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
Available data
568
bigWig
548
bam
268
bed narrowPeak
250
tsv
220
fastq
99
tagAlign
82
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
23
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
2
hdf5
1
bed bed3
Organism
597
Homo sapiens
Biosample type
1685
tissue
597
primary cell
466
cell line
297
in vitro differentiated cells
3
stem cell
Organ
227
epithelium
185
pancreas
34
connective tissue
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
414
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
597
hg19
514
GRCh38
Lab
379
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
41
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
597 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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