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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
139
ChIP-seq
102
single cell RNA-seq
55
total RNA-seq
25
DNase-seq
9
RRBS
2
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
176
DNA accessibility
159
Transcription
139
DNA binding
10
DNA methylation
2
3D chromatin structure
Target of assay
106
histone
106
histone modification
57
narrow histone mark
49
broad histone mark
28
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
26
July, 2019
20
May, 2021
13
October, 2019
12
February, 2023
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
397
bam
359
bigWig
234
fastq
166
tsv
160
bed narrowPeak
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
27
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
Organism
487
Homo sapiens
Biosample type
2292
tissue
549
cell line
487
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
487
AMP
Genome assembly (visualization)
379
hg19
323
GRCh38
Lab
487
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
487 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic beta cell
7
13
12
10
pancreatic alpha cell
6
13
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
5
8
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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