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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
87
single cell RNA-seq
65
ChIP-seq
47
WGBS
17
pCHi-C
10
RRBS
7
Hi-C
1
DNAme array
Assay category
DNA accessibility
184
Transcription
65
DNA binding
58
DNA methylation
7
3D chromatin structure
Target of assay
34
histone
34
histone modification
30
control
22
broad histone mark
12
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
76
February, 2023
74
May, 2022
57
May, 2021
56
September, 2020
19
February, 2021
15
August, 2017
13
July, 2019
8
June, 2019
3
November, 2017
3
October, 2022
2
May, 2020
1
August, 2021
1
May, 2019
1
November, 2018
1
October, 2019
1
September, 2018
Available data
152
fastq
93
zippedFastqFolder
44
bigWig
31
bed narrowPeak
29
bam
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
tsv
4
hdf5
3
bedpe bed3+
3
cool
3
hic
2
csv
2
tagAlign
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
331
Homo sapiens
Biosample type
783
tissue
331
primary cell
179
cell line
104
in vitro differentiated cells
7
stem cell
Organ
139
epithelium
115
pancreas
14
vasculature
12
blood vessel
vein
7
brain
7
connective tissue
6
kidney
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
227
HPAP
88
AMP
16
T1D
Genome assembly (visualization)
507
hg19
GRCh38
Lab
227
Klaus Kaestner, Upenn
53
AMP-T2D consortium
51
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
3
audit script error
organ_slims!
vein
assay_slims!
DNA accessibility
assembly!
GRCh38
BIOSAMPLE
ASSAY
331 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
Langerhans cell
85
pancreatic alpha cell
42
6
31
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
pancreatic beta cell
11
6
16
1
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