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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
single cell RNA-seq
141
ChIP-seq
47
WGBS
10
RRBS
8
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
381
Transcription
DNA accessibility
141
DNA binding
57
DNA methylation
8
3D chromatin structure
Target of assay
104
histone
104
histone modification
57
narrow histone mark
47
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
20
February, 2021
9
November, 2017
9
October, 2019
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
349
fastq
342
bam
322
bigWig
206
tsv
102
bed narrowPeak
93
zippedFastqFolder
47
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
Organism
588
Homo sapiens
Biosample type
2267
tissue
626
cell line
588
primary cell
224
in vitro differentiated cells
10
stem cell
Organ
315
epithelium
275
pancreas
30
connective tissue
30
vasculature
26
blood vessel
24
kidney
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
315
AMP
227
HPAP
45
T1D
1
ITG
Genome assembly (visualization)
336
hg19
314
GRCh38
Lab
315
AMP-T2D consortium
227
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
1
ITG
Audit category:
38
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
assay_slims!
DNA accessibility
month_released!
May, 2021
BIOSAMPLE
ASSAY
588 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
pancreatic alpha cell
52
12
13
31
1
Langerhans cell
85
pancreatic beta cell
21
12
13
16
1
exocrine cell
39
pancreatic ductal cell
4
10
13
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