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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
ATAC-seq
7
single cell RNA-seq
total RNA-seq
3
DNase-seq
2
RRBS
1
pCHi-C
Assay category
25
DNA binding
15
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
25
June, 2019
6
February, 2023
6
July, 2018
4
May, 2020
3
May, 2019
2
July, 2019
2
October, 2019
1
June, 2018
1
May, 2021
Available data
41
bam
34
bigWig
25
bed narrowPeak
23
bigBed narrowPeak
13
tsv
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
90
tissue
56
cell line
50
primary cell
26
in vitro differentiated cells
1
stem cell
Organ
13
connective tissue
10
epithelium
8
kidney
8
musculature of body
6
heart
5
pancreas
1
liver
1
vasculature
Project
49
AMP
1
T1D
Genome assembly (visualization)
38
hg19
32
GRCh38
Lab
49
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
30
audit script error
organ_slims!
vein
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
gabaergic neuron
3
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