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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
178
ChIP-seq
total RNA-seq
48
snATAC-seq
47
WGBS
29
DNase-seq
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
277
DNA accessibility
189
Transcription
178
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
138
histone
138
histone modification
69
broad histone mark
69
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
51
May, 2021
48
July, 2018
47
February, 2021
47
September, 2018
43
April, 2018
43
September, 2020
18
July, 2019
12
February, 2023
11
October, 2019
9
November, 2017
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
November, 2020
1
March, 2023
1
November, 2018
Available data
362
bigWig
355
bam
289
fastq
198
bed narrowPeak
153
zippedFastqFolder
120
tsv
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
711
Homo sapiens
Biosample type
1716
tissue
711
primary cell
542
cell line
258
in vitro differentiated cells
10
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
28
connective tissue
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
478
AMP
232
HPAP
T1D
1
ITG
Genome assembly (visualization)
375
hg19
290
GRCh38
Lab
445
AMP-T2D consortium
232
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
assay_title!
total RNA-seq
award.project!
T1D
BIOSAMPLE
ASSAY
711 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
13
31
1
pancreatic beta cell
23
12
13
16
1
CD8-positive, alpha-beta T cell
2
33
pancreatic acinar cell
9
12
8
1
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