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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
168
ChIP-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
28
DNase-seq
17
pCHi-C
9
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
225
DNA accessibility
188
Transcription
168
DNA binding
51
DNA methylation
8
3D chromatin structure
Target of assay
149
histone
149
histone modification
80
broad histone mark
69
narrow histone mark
17
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
31
July, 2019
18
September, 2020
13
October, 2019
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2023
Available data
598
bigWig
589
bam
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
657
Homo sapiens
Biosample type
2400
tissue
657
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
297
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
385
hg19
295
GRCh38
Lab
262
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
3
audit script error
organ_slims!
vein
files.file_type!
fastq
BIOSAMPLE
ASSAY
657 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
15
85
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
33
4
1
pancreatic beta cell
13
16
1
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