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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
62
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
252
Transcription
178
DNA binding
62
DNA accessibility
Target of assay
151
histone
151
histone modification
76
narrow histone mark
75
broad histone mark
30
control
Date released
149
May, 2021
90
May, 2020
58
September, 2018
48
July, 2018
43
April, 2018
39
August, 2017
18
July, 2019
11
October, 2019
8
June, 2019
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
493
Homo sapiens
Biosample type
1347
tissue
493
primary cell
276
in vitro differentiated cells
227
cell line
3
stem cell
Organ
181
epithelium
172
pancreas
21
connective tissue
15
kidney
11
vasculature
10
blood vessel
10
liver
vein
6
brain
6
heart
4
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
313
AMP
180
T1D
Genome assembly (visualization)
470
hg19
420
GRCh38
Lab
313
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
vein
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
493 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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