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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
100
single cell RNA-seq
84
ATAC-seq
54
total RNA-seq
27
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
156
Transcription
141
DNA binding
111
DNA accessibility
Target of assay
104
histone
104
histone modification
57
narrow histone mark
47
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
45
May, 2020
43
April, 2018
18
July, 2019
14
May, 2021
11
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
409
bam
373
bigWig
240
fastq
168
bed narrowPeak
168
tsv
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
Organism
409
Homo sapiens
Biosample type
1882
tissue
582
cell line
409
primary cell
291
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
409
AMP
Genome assembly (visualization)
379
hg19
333
GRCh38
Lab
409
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
409 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
small RNA-seq
pCHi-C
primary cell
pancreatic beta cell
13
12
7
10
pancreatic alpha cell
13
12
6
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
5
4
pancreatic endocrine cell
23
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