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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
100
single cell RNA-seq
98
total RNA-seq
71
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
pCHi-C
Assay category
200
Transcription
141
DNA binding
98
DNA accessibility
Target of assay
104
histone
104
histone modification
57
narrow histone mark
47
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
90
May, 2020
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
18
July, 2019
11
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
Available data
440
bam
427
bigWig
409
fastq
218
tsv
155
bed narrowPeak
153
zippedFastqFolder
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
440
Homo sapiens
Biosample type
1869
tissue
577
cell line
440
primary cell
206
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
395
AMP
45
T1D
Genome assembly (visualization)
410
hg19
364
GRCh38
Lab
395
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
month_released!
May, 2021
BIOSAMPLE
ASSAY
440 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
pCHi-C
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
pancreatic endocrine cell
23
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