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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
FAIRE-seq
Assay category
20
DNA binding
4
3D chromatin structure
4
DNA accessibility
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
20
October, 2019
4
July, 2019
3
November, 2017
2
June, 2019
1
March, 2020
Available data
26
bam
23
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
Organism
30
Homo sapiens
Biosample type
133
tissue
66
cell line
30
primary cell
Organ
405
epithelium
346
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
30
AMP
Genome assembly (visualization)
24
hg19
18
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
2
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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