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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
Hi-C
3
DNase-seq
2
total RNA-seq
1
FAIRE-seq
Assay category
15
DNA binding
4
3D chromatin structure
4
DNA accessibility
2
Transcription
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
16
October, 2019
4
July, 2019
3
November, 2017
1
June, 2019
1
March, 2020
Available data
23
bigWig
21
bam
16
bed narrowPeak
16
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
25
Homo sapiens
Biosample type
70
tissue
64
cell line
25
primary cell
Organ
227
epithelium
185
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
25
AMP
Genome assembly (visualization)
25
hg19
18
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
DNase-seq
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
12
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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