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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
4
DNA binding
2
Transcription
Target of assay
16
histone
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
6
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
11
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
2
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
15
Homo sapiens
Biosample type
79
tissue
66
cell line
15
primary cell
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
15
AMP
Genome assembly (visualization)
12
hg19
7
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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