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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
94
total RNA-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
7
Hi-C
7
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
165
Transcription
102
DNA binding
92
DNA accessibility
54
DNA methylation
7
3D chromatin structure
Target of assay
74
histone
74
histone modification
39
narrow histone mark
35
broad histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
31
June, 2019
29
August, 2017
19
September, 2020
16
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
255
bam
242
bigWig
238
fastq
118
tsv
115
bed narrowPeak
80
zippedFastqFolder
70
bigBed narrowPeak
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
420
Homo sapiens
Biosample type
420
primary cell
97
tissue
79
cell line
24
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
268
AMP
152
HPAP
Genome assembly (visualization)
239
hg19
236
GRCh38
Lab
268
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
18
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
420 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
small RNA-seq
primary cell
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
pancreatic acinar cell
8
4
9
12
1
pancreatic ductal cell
13
4
4
10
endothelial cell of umbilical vein
17
2
2
1
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