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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
7
DNase-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
FAIRE-seq
Assay category
26
DNA binding
8
DNA accessibility
4
3D chromatin structure
2
DNA methylation
2
Transcription
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
21
October, 2019
8
June, 2019
6
July, 2019
6
November, 2017
1
March, 2020
Available data
36
bam
32
bigWig
24
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
42
Homo sapiens
Biosample type
189
tissue
66
cell line
42
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
42
AMP
Genome assembly (visualization)
35
hg19
25
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
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