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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
7
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
25
DNA binding
8
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
10
June, 2019
5
July, 2019
3
November, 2017
1
March, 2020
Available data
35
bam
30
bigWig
23
bed narrowPeak
23
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
40
Homo sapiens
Biosample type
329
tissue
40
primary cell
1
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
40
AMP
Genome assembly (visualization)
31
hg19
24
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
organ_slims!
artery
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
5
3
1
brain microvascular endothelial cell
3
1
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
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