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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
8
DNase-seq
4
total RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
14
DNA binding
8
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
8
control
5
histone
5
histone modification
5
narrow histone mark
4
RNA binding protein
4
transcription factor
Date released
13
June, 2019
12
July, 2019
9
November, 2017
Available data
30
bigWig
29
bam
17
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
11
bed bed3+
9
fastq
7
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
538
tissue
66
cell line
34
primary cell
1
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
34
AMP
Genome assembly (visualization)
31
hg19
24
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
cardiac fibroblast
5
3
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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