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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
June, 2019
1
July, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
bigBed bedMethyl
1
hdf5
Organism
13
Homo sapiens
Biosample type
400
cell line
360
tissue
15
in vitro differentiated cells
13
primary cell
Organ
400
epithelium
346
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
13 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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