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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
2
DNase-seq
2
RRBS
1
small RNA-seq
1
total RNA-seq
Assay category
13
DNA binding
2
DNA accessibility
2
DNA methylation
2
Transcription
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
15
June, 2019
4
July, 2019
Available data
17
bam
14
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
tsv
Organism
19
Homo sapiens
Biosample type
138
tissue
19
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
19
AMP
Genome assembly (visualization)
16
hg19
14
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
RRBS
small RNA-seq
total RNA-seq
primary cell
skeletal muscle satellite cell
8
1
1
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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