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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
7
DNase-seq
4
Hi-C
3
total RNA-seq
2
RRBS
1
FAIRE-seq
1
small RNA-seq
Assay category
33
DNA binding
8
DNA accessibility
4
3D chromatin structure
4
Transcription
2
DNA methylation
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
6
control
2
RNA binding protein
2
transcription factor
Date released
21
October, 2019
15
June, 2019
8
July, 2019
6
November, 2017
1
March, 2020
Available data
45
bam
40
bigWig
30
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
fastq
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
51
Homo sapiens
Biosample type
215
tissue
66
cell line
51
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
51
AMP
Genome assembly (visualization)
43
hg19
33
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
FAIRE-seq
small RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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