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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
4
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
11
DNA binding
4
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
6
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
12
bam
7
bigWig
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
fastq
2
hdf5
2
hic
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tar
Organism
18
Homo sapiens
Biosample type
68
tissue
18
primary cell
2
cell line
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
18
AMP
Genome assembly (visualization)
43
hg19
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
Hi-C
RRBS
FAIRE-seq
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
skeletal muscle cell
1
1
endothelial cell of hepatic sinusoid
1
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