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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
7
DNase-seq
3
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
33
DNA binding
8
DNA accessibility
4
Transcription
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
6
control
2
RNA binding protein
2
transcription factor
Date released
20
October, 2019
15
June, 2019
6
November, 2017
4
July, 2019
Available data
45
bam
40
bigWig
30
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
fastq
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
45
Homo sapiens
Biosample type
131
tissue
66
cell line
45
primary cell
Organ
242
epithelium
194
pancreas
36
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
45
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
small RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
1
skeletal muscle satellite cell
8
1
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
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