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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
DNase-seq
2
Hi-C
2
total RNA-seq
1
RRBS
Assay category
6
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
6
November, 2017
5
July, 2019
4
June, 2019
Available data
14
bigWig
12
bam
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
bed bed3+
6
fastq
2
hdf5
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
133
tissue
66
cell line
15
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
15
AMP
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
vein
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
primary cell
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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