Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
47
WGBS
43
ChIP-seq
3
Hi-C
Assay category
155
Transcription
71
DNA accessibility
47
DNA methylation
43
DNA binding
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
broad histone mark
12
control
Date released
80
May, 2022
55
September, 2018
37
February, 2023
37
July, 2018
33
April, 2018
31
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
231
fastq
167
bam
165
bigWig
108
tsv
80
zippedFastqFolder
45
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
319
Homo sapiens
Biosample type
464
tissue
319
primary cell
82
cell line
3
in vitro differentiated cells
Organ
375
epithelium
319
pancreas
35
connective tissue
31
kidney
28
vasculature
22
blood vessel
21
brain
13
heart
13
liver
13
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
167
AMP
152
HPAP
Genome assembly (visualization)
165
GRCh38
158
hg19
Lab
167
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
23
missing controlled_by
Audit category:
4
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
319 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
35
31
10
1
pancreatic beta cell
21
12
23
16
10
1
pancreatic acinar cell
4
12
9
4
1
pancreatic ductal cell
4
10
4
7
pancreatic endocrine cell
12
+ See 5 more…
See all biosamples
Download