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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
249
Transcription
247
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
47
June, 2019
46
August, 2017
36
February, 2021
31
October, 2019
28
July, 2019
19
September, 2020
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
506
bigWig
480
bam
295
bed narrowPeak
265
fastq
170
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
98
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
869
Homo sapiens
Biosample type
2376
tissue
869
primary cell
579
cell line
355
in vitro differentiated cells
9
stem cell
Organ
315
epithelium
260
pancreas
33
kidney
33
vasculature
32
connective tissue
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
425
AMP
239
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
521
hg19
436
GRCh38
Lab
393
AMP-T2D consortium
239
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
869 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
31
1
pancreatic beta cell
7
21
23
16
1
Langerhans cell
48
exocrine cell
39
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