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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
230
ChIP-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
283
DNA accessibility
230
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
203
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
46
August, 2017
45
June, 2019
43
April, 2018
24
July, 2019
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
580
bigWig
553
bam
391
fastq
278
bed narrowPeak
265
tsv
153
zippedFastqFolder
98
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1025
Homo sapiens
Biosample type
2433
tissue
1025
primary cell
515
cell line
357
in vitro differentiated cells
9
stem cell
Organ
385
epithelium
334
pancreas
36
connective tissue
33
kidney
33
vasculature
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
496
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
515
GRCh38
Lab
464
AMP-T2D consortium
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
control
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1025 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
7
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
21
7
23
12
16
1
exocrine cell
39
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