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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
36
June, 2019
35
February, 2021
33
May, 2021
21
August, 2017
14
September, 2018
13
July, 2019
12
February, 2023
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
3
October, 2022
3
September, 2020
2
May, 2019
2
November, 2020
1
August, 2021
1
March, 2020
1
March, 2023
Available data
154
bam
129
bigWig
101
zippedFastqFolder
88
fastq
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
tagAlign
1
bed bed3
1
tar
Organism
415
Homo sapiens
Biosample type
918
tissue
509
cell line
415
primary cell
144
in vitro differentiated cells
6
stem cell
Organ
177
epithelium
133
pancreas
20
kidney
18
vasculature
16
connective tissue
15
brain
13
blood vessel
8
blood
8
bodily fluid
7
heart
7
vein
6
liver
4
eye
4
musculature of body
1
bone element
1
bone marrow
Project
243
AMP
147
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
144
hg19
86
GRCh38
Lab
240
AMP-T2D consortium
147
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
26
inconsistent ontology term
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
415 results
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ATAC-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
35
31
6
1
Langerhans cell
48
pancreatic beta cell
23
16
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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