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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
42
ChIP-seq
41
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
276
DNA accessibility
184
Transcription
52
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
237
histone
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
76
February, 2023
59
September, 2020
41
February, 2021
36
June, 2019
36
May, 2021
21
August, 2017
15
September, 2018
13
July, 2019
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
3
October, 2022
2
May, 2019
2
November, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
406
bam
383
bigWig
336
fastq
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
581
Homo sapiens
Biosample type
1068
tissue
581
primary cell
505
cell line
151
in vitro differentiated cells
4
stem cell
Organ
224
epithelium
180
pancreas
20
kidney
18
vasculature
16
connective tissue
15
brain
13
blood vessel
8
blood
8
bodily fluid
7
heart
7
vein
6
liver
4
eye
4
musculature of body
1
bone element
1
bone marrow
Project
318
HPAP
238
AMP
24
T1D
1
ITG
Genome assembly (visualization)
146
hg19
86
GRCh38
Lab
318
Klaus Kaestner, Upenn
233
AMP-T2D consortium
29
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
20
inconsistent ontology term
target.investigated_as!
histone modification
files.file_type!
tsv
BIOSAMPLE
ASSAY
581 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
42
6
25
1
pancreatic beta cell
23
11
6
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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