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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
184
single cell RNA-seq
138
total RNA-seq
48
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
322
Transcription
280
DNA accessibility
49
DNA methylation
42
DNA binding
6
3D chromatin structure
Target of assay
153
histone
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
July, 2019
21
August, 2017
21
May, 2021
13
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
336
fastq
292
bam
265
bigWig
156
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
30
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
2
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
700
Homo sapiens
Biosample type
2043
tissue
700
primary cell
617
cell line
282
in vitro differentiated cells
8
stem cell
Organ
327
epithelium
288
pancreas
22
connective tissue
19
kidney
15
vasculature
11
blood vessel
11
brain
9
liver
7
vein
6
heart
3
eye
3
musculature of body
Project
375
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
271
hg19
224
GRCh38
Lab
370
AMP-T2D consortium
324
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
target.investigated_as!
histone modification
month_released!
July, 2019
award.project!
T1D
BIOSAMPLE
ASSAY
700 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
Hi-C
DNAme array
FAIRE-seq
RRBS
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
31
6
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
16
6
1
exocrine cell
39
pancreatic acinar cell
9
12
4
1
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