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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
13
ChIP-seq
Assay category
28
DNA accessibility
13
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
9
August, 2017
4
October, 2019
3
November, 2017
1
November, 2020
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
41
Homo sapiens
Biosample type
176
tissue
53
cell line
41
primary cell
1
in vitro differentiated cells
Organ
20
epithelium
10
kidney
10
vasculature
8
brain
7
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
41
AMP
Genome assembly (visualization)
37
GRCh38
34
hg19
Lab
41
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
41 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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