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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
135
ChIP-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
135
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
90
May, 2020
57
September, 2018
48
July, 2018
43
April, 2018
36
June, 2019
24
August, 2017
22
July, 2019
15
October, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
3
September, 2020
2
February, 2021
2
October, 2018
1
August, 2021
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
501
Homo sapiens
Biosample type
1479
tissue
503
cell line
501
primary cell
219
in vitro differentiated cells
2
stem cell
Organ
197
epithelium
161
pancreas
28
connective tissue
23
kidney
22
vasculature
18
blood vessel
17
brain
10
vein
9
liver
8
heart
7
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
351
AMP
140
T1D
10
HPAP
Genome assembly (visualization)
484
hg19
417
GRCh38
Lab
326
AMP-T2D consortium
165
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
501 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
53
44
2
pancreatic alpha cell
10
3
12
13
pancreatic beta cell
10
3
12
10
CD8-positive, alpha-beta T cell
4
23
2
pancreatic acinar cell
4
4
12
5
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