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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
85
single cell RNA-seq
67
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
275
Transcription
105
DNA accessibility
67
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
narrow histone mark
3
control
Date released
136
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
175
bigWig
169
fastq
153
zippedFastqFolder
140
bam
102
tsv
64
bed narrowPeak
44
tagAlign
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
514
Homo sapiens
Biosample type
514
primary cell
312
tissue
45
cell line
44
in vitro differentiated cells
2
stem cell
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
324
HPAP
164
T1D
25
AMP
1
ITG
Genome assembly (visualization)
168
hg19
151
GRCh38
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
target.investigated_as!
narrow histone mark
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
514 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
44
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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