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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
153
ChIP-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
285
DNA accessibility
153
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2023
1
November, 2018
Available data
492
bam
491
bigWig
369
fastq
270
tsv
183
bed narrowPeak
153
zippedFastqFolder
75
bigBed narrowPeak
53
tagAlign
37
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
957
Homo sapiens
Biosample type
2428
tissue
957
primary cell
643
cell line
339
in vitro differentiated cells
9
stem cell
Organ
371
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
vein
12
liver
11
heart
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
468
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
504
hg19
427
GRCh38
Lab
443
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
30
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
narrow histone mark
organ_slims!
vein
BIOSAMPLE
ASSAY
957 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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