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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
236
ChIP-seq
Assay category
236
DNA binding
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
37
August, 2017
32
September, 2018
21
October, 2019
19
June, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
229
bigWig
215
bed narrowPeak
202
bam
98
tagAlign
72
fastq
46
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
236
Homo sapiens
Biosample type
592
tissue
236
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
66
epithelium
58
pancreas
17
vasculature
16
blood vessel
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
152
AMP
84
T1D
Genome assembly (visualization)
229
hg19
197
GRCh38
Lab
122
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
inconsistent control run_type
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
236 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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