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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
Assay category
198
DNA binding
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
84
May, 2021
38
August, 2017
32
September, 2018
19
June, 2019
16
October, 2019
3
August, 2021
3
May, 2019
3
November, 2017
Available data
198
bam
198
bigWig
186
bed narrowPeak
98
tagAlign
73
fastq
47
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
3
bed bed3+
Organism
198
Homo sapiens
Biosample type
459
tissue
198
primary cell
78
in vitro differentiated cells
32
cell line
2
stem cell
Organ
61
epithelium
58
pancreas
12
vasculature
11
blood vessel
10
kidney
10
vein
8
connective tissue
8
musculature of body
3
brain
3
liver
2
heart
1
eye
Project
114
AMP
84
T1D
Genome assembly (visualization)
230
hg19
198
GRCh38
Lab
114
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
primary cell
monocyte
84
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
12
endothelial cell of umbilical vein
10
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