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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
65
DNA binding
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
22
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
2
May, 2021
1
May, 2019
Available data
63
bam
62
bigWig
54
bed narrowPeak
40
fastq
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
tagAlign
2
bed bed3+
Organism
65
Homo sapiens
Biosample type
309
tissue
65
primary cell
45
in vitro differentiated cells
17
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
65
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
65
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
skeletal muscle myoblast
6
epithelial cell of proximal tubule
4
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