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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
Target of assay
234
histone
234
histone modification
120
broad histone mark
114
narrow histone mark
34
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
May, 2019
Available data
111
bigWig
103
bed narrowPeak
102
bam
47
tagAlign
40
fastq
25
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
114
Homo sapiens
Biosample type
276
tissue
114
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
34
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
4
connective tissue
4
kidney
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
74
AMP
40
T1D
Genome assembly (visualization)
111
hg19
101
GRCh38
Lab
64
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2019
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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