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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
Assay category
100
DNA binding
Target of assay
205
histone
205
histone modification
105
broad histone mark
100
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
97
bigWig
89
bed narrowPeak
88
bam
47
tagAlign
26
bigBed narrowPeak
25
fastq
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
100
Homo sapiens
Biosample type
309
tissue
100
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
24
epithelium
16
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
60
AMP
40
T1D
Genome assembly (visualization)
97
hg19
87
GRCh38
Lab
50
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
September, 2018
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
primary cell
monocyte
41
CD8-positive, alpha-beta T cell
10
pancreatic endocrine cell
8
endothelial cell of umbilical vein
6
skeletal muscle myoblast
6
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