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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
4
single cell RNA-seq
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
12
DNA binding
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
12
June, 2019
8
July, 2019
4
November, 2020
2
April, 2018
2
July, 2018
1
February, 2021
Available data
27
bam
25
bigWig
15
tsv
9
bed narrowPeak
9
bigBed narrowPeak
3
fastq
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
29
Homo sapiens
Biosample type
538
tissue
78
in vitro differentiated cells
29
primary cell
Organ
315
epithelium
275
pancreas
30
vasculature
29
connective tissue
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
29
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
assay_slims!
DNA accessibility
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
1
osteoblast
5
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
brain pericyte
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
mesangial cell
1
pericardium fibroblast
1
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