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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
7
single cell RNA-seq
4
total RNA-seq
3
DNase-seq
2
RRBS
1
pCHi-C
Assay category
DNA binding
15
DNA accessibility
11
Transcription
2
DNA methylation
Date released
8
May, 2020
6
February, 2023
6
July, 2018
3
June, 2019
2
July, 2019
2
October, 2019
1
June, 2018
1
May, 2021
Available data
20
bam
18
bigWig
17
tsv
7
fastq
5
bed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
29
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
67
cell line
29
primary cell
1
stem cell
Organ
5
pancreas
4
epithelium
2
connective tissue
2
heart
2
kidney
1
liver
1
vasculature
Project
24
AMP
5
T1D
Genome assembly (visualization)
22
hg19
16
GRCh38
Lab
24
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
31
audit script error
29
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
29 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
gabaergic neuron
3
microglial cell/astrocyte
3
cardiac fibroblast
1
1
co-expressing pancreatic endocrine cell
2
epithelial cell of proximal tubule
1
1
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
smooth muscle cell of the brain vasculature
1
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